Treffer: GenProtein Finder

GenProtein-Finder Welcome to GenProtein Finder! A Python tool for analyzing protein distribution across multiple genomes, enabling bidirectional searches and comparative genomics analysis. 📋 Features Genome-to-Protein Search: Find all proteins present in a specific genome Protein-to-Genome Search: Identify which genomes contain a specific protein Occurrence Statistics: Analyze protein distribution and identify shared proteins across genomes Partial Name Matching: Search genomes using partial names (e.g., "GCA_") Interactive Menu: User-friendly command-line interface 🚀 Getting Started Prerequisites Python 3.6+ pandas openpyxl (for Excel file support) Installation Install required dependencies: pip install pandas openpyxl Input Data Format The script expects an Excel file with the following structure: Columns 1-3: Metadata (ignored by the script) Columns 4+: Each column represents a genome, containing protein names Protein names should be listed in each genome column Empty cells are automatically handled Example: Meta1 Meta2 Meta3 GCA_000001.1 GCA_000002.1 GCA_000003.1 . . . CP000360.1_737 CP000360.1_737 CP000455.1_123 . . . CP000360.1_891 CP000455.1_123 CP000360.1_737 🔧 Usage If you are using Linux and running from the terminal, give execution permission to the script: chmod +x genprotein_finder.py Update the file path in the script: excel_file = "path/to/your/excel/file.xlsx" Run python3 genprotein_finder.py 📞 Contact Vinicius Henrique de Oliveira Franzote - vinicius.henrique@unesp.br