Treffer: YASARA Model-Interactive Molecular Modeling from Two Dimensions to Virtual Realities.

Title:
YASARA Model-Interactive Molecular Modeling from Two Dimensions to Virtual Realities.
Authors:
Ozvoldik K; Center for Physiology and Pharmacology, Institute of Pharmacology, Medical University of Vienna, Waehringerstr. 13A, 1090 Vienna, Austria.; YASARA Biosciences GmbH, Wagramer Str. 25/3/45, 1220 Vienna, Austria., Stockner T; Center for Physiology and Pharmacology, Institute of Pharmacology, Medical University of Vienna, Waehringerstr. 13A, 1090 Vienna, Austria., Krieger E; YASARA Biosciences GmbH, Wagramer Str. 25/3/45, 1220 Vienna, Austria.
Source:
Journal of chemical information and modeling [J Chem Inf Model] 2023 Oct 23; Vol. 63 (20), pp. 6177-6182. Date of Electronic Publication: 2023 Oct 02.
Publication Type:
Journal Article; Research Support, Non-U.S. Gov't
Language:
English
Journal Info:
Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE
Imprint Name(s):
Original Publication: Washington, D.C. : American Chemical Society, c2005-
References:
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Grant Information:
P 32017 Austria FWF_ Austrian Science Fund FWF
Entry Date(s):
Date Created: 20231002 Date Completed: 20231027 Latest Revision: 20250530
Update Code:
20250530
PubMed Central ID:
PMC10598798
DOI:
10.1021/acs.jcim.3c01136
PMID:
37782001
Database:
MEDLINE

Weitere Informationen

The industry's transition from three-dimensional (3D) glasses to virtual reality (VR) headsets has left modelers stranded without hardware supply, since walking around and waving arms in a virtual world is a great experience but also very tiring when doing time-intensive modeling work. We present a novel software implementation that uses a VR headset while sitting at a desk in front of the normal screen, which is beamed into the virtual reality together with keyboard, mouse, and chair using the headset's cameras and an extra tracker attached to the seat-back. Compared to 3D glasses, this yields a comparably relaxing but much more immersive workplace and provides additional possibilities such as taking molecules into one's hands, standing up, and walking or teleporting through the models. This VR functionality has been combined with a molecular graphics engine based on Vulkan, a next-generation cross-platform application programming interface (API) for GPUs and the successor of the widely used Open Graphics Library (OpenGL). It is built into the YASARA Model program, which includes many features like small and large molecule builders, electron densities, partial surfaces, contact analysis, coordinate manipulation, and animations. Interactive tutorials are provided to guide modelers into VR and familiarize them with the molecular modeling features. YASARA Model is available for Linux, Windows, Android, and MacOS (the latter without VR) with an introductory video at www.YASARA.org/vr.