Treffer: RNA Movies 2: sequential animation of RNA secondary structures.

Title:
RNA Movies 2: sequential animation of RNA secondary structures.
Authors:
Kaiser A; Faculty of Technology, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany., Krüger J, Evers DJ
Source:
Nucleic acids research [Nucleic Acids Res] 2007 Jul; Vol. 35 (Web Server issue), pp. W330-4. Date of Electronic Publication: 2007 Jun 12.
Publication Type:
Journal Article; Research Support, Non-U.S. Gov't
Language:
English
Journal Info:
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
Imprint Name(s):
Publication: 1992- : Oxford : Oxford University Press
Original Publication: London, Information Retrieval ltd.
MeSH Terms:
Data Display* , Nucleic Acid Conformation*, Computational Biology/*methods , Natronobacterium/*genetics , RNA/*chemistry, Algorithms ; Computer Simulation ; Internet ; Multimedia ; Programming Languages ; RNA, Bacterial/chemistry ; User-Computer Interface
References:
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RNA. 2001 Feb;7(2):254-65. (PMID: 11233982)
BMC Bioinformatics. 2004 Aug 4;5:104. (PMID: 15294028)
Comput Appl Biosci. 1988 Mar;4(1):167-73. (PMID: 2454712)
J Biomol Struct Dyn. 1985 Feb;2(5):953-62. (PMID: 2477031)
BMC Bioinformatics. 2006;7:490. (PMID: 17087823)
Comput Appl Biosci. 1993 Dec;9(6):735-40. (PMID: 7511479)
Bioinformatics. 1999 Jan;15(1):32-7. (PMID: 10068690)
Bioinformatics. 2006 Feb 15;22(4):500-3. (PMID: 16357029)
Curr Opin Struct Biol. 2006 Jun;16(3):270-8. (PMID: 16713706)
Nucleic Acids Res. 1991 May 11;19(9):2489-94. (PMID: 1710358)
Substance Nomenclature:
0 (RNA, Bacterial)
63231-63-0 (RNA)
Entry Date(s):
Date Created: 20070615 Date Completed: 20070803 Latest Revision: 20181113
Update Code:
20250114
PubMed Central ID:
PMC1933240
DOI:
10.1093/nar/gkm309
PMID:
17567618
Database:
MEDLINE

Weitere Informationen

RNA Movies is a simple, yet powerful visualization tool in likeness to a media player application, which enables to browse sequential paths through RNA secondary structure landscapes. It can be used to visualize structural rearrangement processes of RNA, such as folding pathways and conformational switches, or to browse lists of alternative structure candidates. Besides extending the feature set, retaining and improving usability and availability in the web is the main aim of this new version. RNA Movies now supports the DCSE and RNAStructML input formats besides its own RNM format. Pseudoknots and 'entangled helices' can be superimposed on the RNA secondary structure layout. Publication quality output is provided through the Scalable Vector Graphics output format understood by most current drawing programs. The software has been completely re-implemented in Java to enable pure client-side operation as applet and web-start application available at the Bielefeld Bioinformatics Server http://bibiserv.techfak.uni-bielefeld.de/rnamovies.