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Showing 121 - 140 of 375

121

OpenABC Enables Flexible, Simplified, and Efficient GPU Accelerated Simulations of Biomolecular Condensates.
Liu S ; Wang C ; Latham A ; et al.
Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

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122

A general biological simulator: the multiscale object oriented simulation environment, MOOSE.
Ray, Subhasis ; Deshpande, Raamesh ; Dudani, Niraj ; et al.
BMC Neuroscience. 2008 Supplement 1, Vol. 9, Special section p1-2. 2p.

BIOLOGICAL models SIMULATION methods & mod... OBJECT-oriented methods... COMPUTATIONAL biology C++ PYTHON programming langu...
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123

MolDy: molecular dynamics simulation made easy.
Khan, Mohd Imran ; Pathania, Sheetal ; Al-Rabia, Mohammed W ; et al.
Bioinformatics. Jun2024, Vol. 40 Issue 6, p1-4. 4p.

MOLECULAR dynamics INTERMOLECULAR interacti... LINUX operating systems USER interfaces SIMULATION software PYTHON programming langu... …
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124

Introduction.
Barth, Timothy J. ; Griebel, Michael ; Keyes, David E. ; et al.
Python Scripting for Computational Science (978-3-540-73915-9); 2008, p1-25, 25p

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125

MUMmer4: A fast and versatile genome alignment system.
Marçais, Guillaume ; Delcher, Arthur L. ; Phillippy, Adam M. ; et al.
PLoS Computational Biology. 1/26/2018, Vol. 14 Issue 1, p1-14. 14p. 6 Charts, 1 Graph.

GENOMES GENOMICS GENOTYPES GENES SPECIES
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126

BioSimGrid: Grid-enabled biomolecular simulation data storage and analysis
Future Generation Computer Systems. May, 2006, Vol. 22 Issue 6, p657, 8 p.

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127

Local Disordered Region Sampling (LDRS) for ensemble modeling of proteins with experimentally undetermined or low confidence prediction segments.
Liu, Zi Hao ; Teixeira, João M C ; Zhang, Oufan ; et al.
Bioinformatics. Dec2023, Vol. 39 Issue 12, p1-5. 5p.

PROTEIN models MEMBRANE proteins CYTOSKELETAL proteins PROTEIN structure
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128

Text–Model Generation–Machine Learning Framework and Performance of Three-sided Protection Steel Beam Temperature Model
Li, Yang ; You, Yang ; Sun, Lele ; et al.
In KSCE Journal of Civil Engineering

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129

MLatom: A program package for quantum chemical research assisted by machine learning.
Dral, Pavlo O.
Journal of Computational Chemistry. 10/5/2019, Vol. 40 Issue 26, p2339-2347. 9p.

MACHINE learning CHEMICAL research MOLECULAR shapes LINEAR algebra FORTRAN QUANTUM computing …
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130

BioSimGrid: Grid-enabled biomolecular simulation data storage and analysis
Ng, Muan Hong ; Johnston, Steven ; Wu, Bing ; et al.
In Future Generation Computer Systems 2006 22(6):657-664

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131

Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite.
Hafez, Ahmed Ibrahem ; Soriano, Beatriz ; Elsayed, Aya Allah ; et al.
Genes. Feb2023, Vol. 14 Issue 2, p267. 20p.

RNA sequencing EXPERT systems LINUX operating systems CHATBOTS THIRD-party software STEVEDORES …
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132

Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems
Djaffardjy, Marine ; Marchment, George ; Sebe, Clémence ; et al.
In Computational and Structural Biotechnology Journal 2023 21:2075-2085

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133

Workflows for microarray data processing in the Kepler environment.
Stropp, Thomas ; McPhillips, Timothy ; Lud�scher, Bertram Lud�scher ; et al.
BMC Bioinformatics. 2012, Vol. 13 Issue 1, p102-116. 15p. 6 Diagrams, 1 Chart.

DATA analysis WORKFLOW CHROMATIN IMMUNOPRECIPITATION GENE expression BIOINFORMATICS
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135

pyPRISM: A Computational Tool for Liquid-State Theory Calculations of Macromolecular Materials.
Martin, Tyler B. ; Gartner III, Thomas E. ; Jones, Ronald L. ; et al.
Macromolecules. 4/24/2018, Vol. 51 Issue 8, p2906-2922. 17p.

BLOCK copolymers POLYMER liquid crystals MATHEMATICAL models of t...
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136

Using GENESIS 3 for single neuron modeling.
Coop, Allan D. ; Cornelis, Hugo ; Rodriguez, Mando ; et al.
BMC Neuroscience. 2009 Supplement 1, Vol. 10, Special section p1-2. 2p.

COMPUTER software NEURONS COMPUTATIONAL biology SOFTWARE architecture COMPUTER simulation CELLS …
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137

XSim version 2: simulation of modern breeding programs.
Chunpeng James Chen ; Garrick, Dorian ; Fernando, Rohan ; et al.
G3: Genes | Genomes | Genetics. Apr2022, Vol. 12 Issue 4, p1-9. 9p.

PROGRAMMING languages ANIMAL populations PLANT populations OPERATOR functions EMBRYO transfer
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138

Recent developments in the CCP-EM software suite.
Burnley, Tom ; Palmer, Colin M. ; Winn, Martyn
Acta Crystallographica: Section D, Structural Biology. Jun2017, Vol. 73 Issue 6, p469-477. 8p.

CRYOELECTRONICS ELECTRON microscopy GRAPHICAL user interface...
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139

Getting Started with Python Scripting.
Barth, Timothy J. ; Griebel, Michael ; Keyes, David E. ; et al.
Python Scripting for Computational Science; 2006, p27-72, 46p

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140

Fortran Programming with NumPy Arrays
Texts in Computational Science and Engineering ; Python Scripting for Computational Science ; page 451-482 ; ISSN 1611-0994 ; ISBN 9783540739159 9783540739166

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