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1

Introducing Python Programming into Undergraduate Biology
DAVID, ANDREW A.
The American Biology Teacher, 2021 Jan 01. 83(1), 33-41.

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2

PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity.
Larralde M ; Zeller G ; Carroll LM
Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE

Algorithms Genomics methods Software Programming Languages Computational Biology me... Nucleotides genetics
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3

Lowering Barriers to Coding: Incorporating Generative Artificial Intelligence to Support Data Analysis in a Biology Class.
Davinack, Andrew A.
American Biology Teacher (University of California Press). Nov/Dec2025, Vol. 87 Issue 9, p547-552. 6p.

GENERATIVE artificial in... DATA analysis CHATBOTS PYTHON programming langu... STUDENT engagement EDUCATIONAL outcomes …
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4

From Zero to Python in 10.5 Hours: Building Foundational Programming Skills with Marine Biology Graduate Students and Researchers in an Introductory Workshop Series.
Timms, Geoffrey P. ; Guyon, Jeffrey R.
Science & Technology Libraries. 2023, Vol. 42 Issue 3, p371-390. 20p.

Marine biology Biology students Graduate students Python programming langu... Scientific visualization Active learning
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5

A new approach to teach molecular biology in high school using Python
Sarkar, Sanchita ; Sarkar, Santu
2016 IEEE Region 10 Humanitarian Technology Conference (R10-HTC) Humanitarian Technology Conference (R10-HTC), 2016 IEEE Region 10. :1-5 Dec, 2016

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6

Evaluation of the Effectiveness of Data Preparation in Phenotyping Wheat Seedlings of Various Varieties
Goonko, Andrew V. ; Seroklinov, Gennady V.
2024 IEEE 3rd International Conference on Problems of Informatics, Electronics and Radio Engineering (PIERE) Problems of Informatics, Electronics and Radio Engineering (PIERE), 2024 IEEE 3rd International Conference on. :630-633 Nov, 2024

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7

Teaching Python Programming for Bioinformatics with Jupyter Notebook in the Post-COVID-19 Era
Gupta, Yash Munnalal ; Kirana, Satwika Nindya ; Homchan, Somjit ; et al.
3

Programming Languages Teaching Methods Computer Software Genetics Laboratory Experiments COVID-19 …
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8

Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.
Silberberg, Mauro ; Hermjakob, Henning ; Malik-Sheriff, Rahuman S ; et al.
Bioinformatics. Aug2024, Vol. 40 Issue 8, p1-6. 6p.

PYTHON programming langu... SYSTEMS biology DYNAMICAL systems CHEMICAL engineering SOURCE code
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9

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11

Book Review: Python programming for Biology (ISBN 978-0-521-72009-0)
Alberto eMarin-Sanguino
Frontiers in Genetics, Vol 7 (2016)

Computational Biology Systems Biology bioinformatics python Programming Languages Genetics …
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12

Lemon-Flavored Gummy Candies: Sourness, Flavor and Overall Acceptance Optimization Using Lattice-Simplex Mixture Design Implemented with Python Programming Language
Jorge Adahir Cruz-Enriquez ; Laura García-Curiel ; Jesús Guadalupe Pérez-Flores ; et al.
Biology and Life Sciences Forum, Vol 40, Iss 1, p 41 (2025)

confectionery industry gummy candies simplex–lattice mixture design food additives Python …
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14

Effect of Block-Based Python Programming Environment on Programming Learning
Yongcheon Kim ; Jamee Kim ; Wongyu Lee
Applied Sciences, Vol 13, Iss 19, p 10898 (2023)

block-based python progr... programming environment programming learning Technology Engineering (General). C... TA1-2040 …
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15

VaMiAnalyzer: an open source, Python-based application for analysis of 3D in vitro vasculogenic mimicry assays
Moore, Stephen P. G. ; Zou, Anqi ; Zhang, Xinyu ; et al.
BMC Bioinformatics. October 24, 2025, Vol. 26 Issue 1

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16

hopsy - a methods marketplace for convex polytope sampling in Python.
Paul RD ; Jadebeck JF ; Stratmann A ; et al.
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Bayes Theorem Monte Carlo Method Markov Chains Computational Biology me... Software Algorithms …
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17

TRAMbio: a flexible python package for graph rigidity analysis of macromolecules.
Handke, Nicolas ; Gatter, Thomas ; Reinhardt, Franziska ; et al.
BMC Bioinformatics. 10/28/2025, Vol. 26 Issue 1, p1-23. 23p.

MOLECULAR biology PROTEIN conformation CONSTRAINT algorithms PYTHON programming langu... PROTEIN folding MACROMOLECULES
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18

Bio-sonification – Converting Microcurrent Fluctuations of Plant Leaves into Sound
Kurundkar, Sangeeta ; Lathiya, Devansh ; Kurade, Sejal ; et al.
2023 7th International Conference on I-SMAC (IoT in Social, Mobile, Analytics and Cloud) (I-SMAC) I-SMAC (IoT in Social, Mobile, Analytics and Cloud) (I-SMAC), 2023 7th International Conference on. :831-836 Oct, 2023

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20

Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python.
Lubbock, Alexander L R ; Lopez, Carlos F
Bioinformatics. 10/15/2022, Vol. 38 Issue 20, p4823-4825. 3p.

SYSTEMS biology PYTHON programming langu... METADATA INTERNET servers HETEROGENEOUS computing COMPUTATIONAL biology
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