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41

Python for Quantum Chemistry : A Full Stack Programming Guide
Qiming Sun ; Qiming Sun

Python (Computer program... Quantum chemistry--Data... Quantum chemistry--Compu...
E-Book
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42

Cooltools: Enabling high-resolution Hi-C analysis in Python.
Abdennur, Nezar ; Abraham, Sameer ; Fudenberg, Geoffrey ; et al.
PLoS Computational Biology. 5/6/2024, Vol. 20 Issue 5, p1-16. 16p.

PYTHON programming langu... PYTHONS COMPUTER workstation clu... RESEARCH personnel CHROMOSOMES CLUSTER analysis (Statis...
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43

A primer on scientific programming with Python
Langtangen, Hans Petter, 1962- ; Langtangen, Hans Petter, 1962-

Python (Computer program... Computer science. Mathematics. Software engineering.
Buch
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45

Python Programming for Biology ; Bioinformatics and Beyond
Stevens, Tim J. ; Boucher, Wayne
ISBN 9780521895835 9780521720090 9780511843556.

Buch
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46

polars-bio-fast, scalable, and out-of-core operations on large genomic interval datasets.
Wiewiórka M ; Khamutou P ; Zbysiński M ; et al.
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Databases, Genetic Programming Languages Algorithms Software Genomics methods Computational Biology me...
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47

GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data.
Schmitt, Pauline ; Sorin, Baptiste ; Frouté, Timothée ; et al.
Genes. Feb2023, Vol. 14 Issue 2, p269. 11p.

GENE regulatory networks PYTHON programming langu... GENE expression GENE libraries SYSTEMS biology PROGRAMMING languages
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48

Book Review: Computing for Biologists: Python programming and Principles (ISBN 978-1-107-64218-8)
Alberto eMarin-Sanguino
Frontiers in Genetics, Vol 7 (2016)

Computational Biology Systems Biology Computing python Programming Languages Genetics …
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49

The experience of teaching introductory programming skills to bioscientists in Brazil.
Zuvanov, Luíza ; Basso Garcia, Ana Letycia ; Correr, Fernando Henrique ; et al.
PLoS Computational Biology. 11/11/2021, Vol. 17 Issue 11, p1-16. 16p. 2 Diagrams, 1 Chart, 1 Graph, 1 Map.

BRAZIL PYTHON programming langu... UNIVERSITY faculty COMPUTATIONAL biology COMPUTER science FACE-to-face communicati... …
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50

CosinorPy: a python package for cosinor-based rhythmometry
Moskon, Miha
BMC Bioinformatics. October 29, 2020, Vol. 21 Issue 1

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51

bmdrc: Python package for quantifying phenotypes from chemical exposures with benchmark dose modeling.
Degnan, David J. ; Bramer, Lisa M. ; Truong, Lisa ; et al.
PLoS Computational Biology. 7/28/2025, Vol. 21 Issue 7, p1-8. 8p.

UNITED States. Environme... TOXIC substance exposure TOXICOLOGY PYTHON programming langu... PHENOTYPES PHYSIOLOGY …
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52

Open-source Python software for analysis of 3D kinematics from quadrupedal animals.
Maghsoudi, Omid Haji ; Vahedipour, Annie ; Hallowell, Thomas ; et al.
Biomedical Signal Processing & Control. May2019, Vol. 51, p364-373. 10p.

Kinematics Elbow Systems software Computer software Python programming langu... Knee …
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53

Teaching Computation to Biologists
Kingsford, Carl
Computing in Science & Engineering Comput. Sci. Eng. Computing in Science & Engineering. 18(1):4-5 Jan, 2016

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54

pyResearchInsights—An open‐source Python package for scientific text analysis.
Shetty, Sarthak J. ; Ramesh, Vijay
Ecology & Evolution (20457758). Oct2021, Vol. 11 Issue 20, p13920-13929. 10p.

Biodiversity conservatio... Biodiversity Landscape ecology Plant ecology Conservation biology Python programming langu... …
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55

Superstructure optimization of a microalgal biorefinery design with life cycle assessment‐based and economic objectives.
Kopton, Johannes ; Rihko‐Struckmann, Liisa K. ; König‐Mattern, Laura ; et al.
Biofuels, Bioproducts & Biorefining. Nov2023, Vol. 17 Issue 6, p1515-1527. 13p.

Biomass conversion Life cycles (Biology) Business cycles Open source software Phaeodactylum tricornutu... Product life cycle asses... …
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56

Testing Linear Regressions by StatsModel Library of Python for Oceanological Data Interpretation
Polina Lemenkova
Aquatic Sciences and Engineering, Vol 34, Iss 2, Pp 51-60 (2019)

programming language python statistical analysis pacific ocean hadal trenches mariana trench …
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57

aPhyloGeo: a Python application for correlating genetic and climatic conditions.
Galaz, Ana Laura Chenoweth ; Tahiri, Nadia
Bioinformatics. Nov2025, Vol. 41 Issue 11, p1-5. 5p.

GENETIC variation PHYLOGEOGRAPHY GENETIC mutation PYTHON programming langu... GEOSPATIAL data ELECTRONIC data processi... …
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58

rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics
Bonet, Jaume ; Harteveld, Zander ; Sesterhenn, Fabian ; et al.
BMC Bioinformatics. May 15, 2019, Vol. 20 Issue 1

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59

PyFibers: An open-source NEURON-Python package to simulate responses of model nerve fibers to electrical stimulation.
Marshall, Daniel P. ; Farah, Elie S. ; Musselman, Eric D. ; et al.
PLoS Computational Biology. 12/12/2025, Vol. 21 Issue 12, p1-30. 30p.

NERVE fibers ELECTRIC stimulation OPEN source software PYTHON programming langu... COMPUTER simulation NEURONS …
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60

BCI Toolbox: An open-source python package for the Bayesian causal inference model.
Zhu, Haocheng ; Beierholm, Ulrik ; Shams, Ladan
PLoS Computational Biology. 7/8/2024, Vol. 20 Issue 7, p1-12. 12p.

CAUSAL inference PYTHON programming langu... BAYESIAN field theory CAUSAL models BEHAVIORAL assessment COGNITIVE computing
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