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121

BioSimGrid: Grid-enabled biomolecular simulation data storage and analysis
Future Generation Computer Systems. May, 2006, Vol. 22 Issue 6, p657, 8 p.

Fachzeitschrift
122

Pytim: A python package for the interfacial analysis of molecular simulations.
Sega, Marcello ; Hantal, György ; Fábián, Balázs ; et al.
Journal of Computational Chemistry. Sep2018, Vol. 39 Issue 25, p2118-2125. 8p.

PYTHON programming langu... MOLECULAR dynamics TRAJECTORY optimization SCRIPTING languages (Com... COMPUTATIONAL chemistry
Fachzeitschrift
123

Text–Model Generation–Machine Learning Framework and Performance of Three-sided Protection Steel Beam Temperature Model
Li, Yang ; You, Yang ; Sun, Lele ; et al.
In KSCE Journal of Civil Engineering

Fachzeitschrift
124

BioSimGrid: Grid-enabled biomolecular simulation data storage and analysis
Ng, Muan Hong ; Johnston, Steven ; Wu, Bing ; et al.
In Future Generation Computer Systems 2006 22(6):657-664

Fachzeitschrift
125

Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems
Djaffardjy, Marine ; Marchment, George ; Sebe, Clémence ; et al.
In Computational and Structural Biotechnology Journal 2023 21:2075-2085

Fachzeitschrift
126

The pucke.rs toolkit to facilitate sampling the conformational space of biomolecular monomers.
Rihon, Jérôme ; Reynders, Sten ; Bernardes Pinheiro, Vitor ; et al.
Journal of Cheminformatics. 4/17/2025, Vol. 17 Issue 1, p1-20. 20p.

COMPUTATIONAL chemistry POTENTIAL energy surface... MATHEMATICAL optimizatio... LINEAR algebra MOIETIES (Chemistry)
Fachzeitschrift
128

Ganga: A tool for computational-task management and easy access to Grid resources
Mościcki, J.T. ; Brochu, F. ; Ebke, J. ; et al.
Computer Physics Communications. Nov2009, Vol. 180 Issue 11, p2303-2316. 14p.

COMPUTER software NUMERICAL grid generatio... INFORMATION resources SCIENCE projects PARTICLES (Nuclear physi... PROGRAMMING languages
Zeitschrift
129

A general biological simulator: the multiscale object oriented simulation environment, MOOSE.
Ray, Subhasis ; Deshpande, Raamesh ; Dudani, Niraj ; et al.
BMC Neuroscience. 2008 Supplement 1, Vol. 9, Special section p1-2. 2p.

BIOLOGICAL models SIMULATION methods & mod... OBJECT-oriented methods... COMPUTATIONAL biology C++ PYTHON programming langu...
Fachzeitschrift
130

MolDy: molecular dynamics simulation made easy.
Khan, Mohd Imran ; Pathania, Sheetal ; Al-Rabia, Mohammed W ; et al.
Bioinformatics. Jun2024, Vol. 40 Issue 6, p1-4. 4p.

MOLECULAR dynamics INTERMOLECULAR interacti... LINUX operating systems USER interfaces SIMULATION software PYTHON programming langu...
Fachzeitschrift
131

MUMmer4: A fast and versatile genome alignment system.
Marçais, Guillaume ; Delcher, Arthur L. ; Phillippy, Adam M. ; et al.
PLoS Computational Biology. 1/26/2018, Vol. 14 Issue 1, p1-14. 14p. 6 Charts, 1 Graph.

GENOMES GENOMICS GENOTYPES GENES SPECIES
Fachzeitschrift
132

Local Disordered Region Sampling (LDRS) for ensemble modeling of proteins with experimentally undetermined or low confidence prediction segments.
Liu, Zi Hao ; Teixeira, João M C ; Zhang, Oufan ; et al.
Bioinformatics. Dec2023, Vol. 39 Issue 12, p1-5. 5p.

PROTEIN models MEMBRANE proteins CYTOSKELETAL proteins PROTEIN structure
Fachzeitschrift
133

MLatom: A program package for quantum chemical research assisted by machine learning.
Dral, Pavlo O.
Journal of Computational Chemistry. 10/5/2019, Vol. 40 Issue 26, p2339-2347. 9p.

MACHINE learning CHEMICAL research MOLECULAR shapes LINEAR algebra FORTRAN QUANTUM computing
Fachzeitschrift
134

Workflows for microarray data processing in the Kepler environment.
Stropp, Thomas ; McPhillips, Timothy ; Lud�scher, Bertram Lud�scher ; et al.
BMC Bioinformatics. 2012, Vol. 13 Issue 1, p102-116. 15p. 6 Diagrams, 1 Chart.

DATA analysis WORKFLOW CHROMATIN IMMUNOPRECIPITATION GENE expression BIOINFORMATICS
Fachzeitschrift
135

pyPRISM: A Computational Tool for Liquid-State Theory Calculations of Macromolecular Materials.
Martin, Tyler B. ; Gartner III, Thomas E. ; Jones, Ronald L. ; et al.
Macromolecules. 4/24/2018, Vol. 51 Issue 8, p2906-2922. 17p.

BLOCK copolymers POLYMER liquid crystals MATHEMATICAL models of t...
Fachzeitschrift
136

Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite.
Hafez, Ahmed Ibrahem ; Soriano, Beatriz ; Elsayed, Aya Allah ; et al.
Genes. Feb2023, Vol. 14 Issue 2, p267. 20p.

RNA sequencing EXPERT systems LINUX operating systems CHATBOTS THIRD-party software STEVEDORES
Fachzeitschrift
137

Using GENESIS 3 for single neuron modeling.
Coop, Allan D. ; Cornelis, Hugo ; Rodriguez, Mando ; et al.
BMC Neuroscience. 2009 Supplement 1, Vol. 10, Special section p1-2. 2p.

COMPUTER software NEURONS COMPUTATIONAL biology SOFTWARE architecture COMPUTER simulation CELLS
Fachzeitschrift
138

Getting Started with Python Scripting.
Barth, Timothy J. ; Griebel, Michael ; Keyes, David E. ; et al.
Python Scripting for Computational Science; 2006, p27-72, 46p

Buch
139

XSim version 2: simulation of modern breeding programs.
Chunpeng James Chen ; Garrick, Dorian ; Fernando, Rohan ; et al.
G3: Genes | Genomes | Genetics. Apr2022, Vol. 12 Issue 4, p1-9. 9p.

PROGRAMMING languages ANIMAL populations PLANT populations OPERATOR functions EMBRYO transfer
Fachzeitschrift
140

Recent developments in the CCP-EM software suite.
Burnley, Tom ; Palmer, Colin M. ; Winn, Martyn
Acta Crystallographica: Section D, Structural Biology. Jun2017, Vol. 73 Issue 6, p469-477. 8p.

CRYOELECTRONICS ELECTRON microscopy GRAPHICAL user interface...
Fachzeitschrift

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